FastQCFastQC Report
Mon 13 May 2024
EGAF00007948314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54227948
Total Bases8.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA3776120.6963420411924862No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG2895220.5338981294294964No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA958120.17668380149660098No Hit
CAAACACACACACACACACACACACACACACACACACACACACACACACA732390.1350576643615576No Hit
ACACACACACACACACACACACACACACACACACACACACACACACACAC612820.11300814849199163No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)