FastQCFastQC Report
Mon 13 May 2024
EGAF00007948338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55785770
Total Bases8.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1073960.1925150446072538No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA847550.1519294257298949No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG699330.1253599260169753No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)