FastQCFastQC Report
Mon 13 May 2024
EGAF00007948340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52907190
Total Bases7.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG705770.13339774801874754No Hit
GGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGG637950.12057907441313741No Hit
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGG595010.1124629752591283No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)