FastQCFastQC Report
Mon 13 May 2024
EGAF00007948388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58507604
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG918110.15692148323147875No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA718440.12279429525092157No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT599340.10243796686666573No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)