FastQCFastQC Report
Mon 13 May 2024
EGAF00007948402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50252406
Total Bases7.5 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGG1074450.21381065814042813No Hit
GGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGG749800.14920678623825495No Hit
CGAGAGACCACGGGCGAGGCCGGGGCGACGGGGAAGGCGCGAGAAAGGCG550640.10957485299310844No Hit
CGCGGGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGC506310.10075338482300729No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)