FastQCFastQC Report
Wed 15 May 2024
EGAF00007948418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48250205
Total Bases7.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG646630.1340160109164303No Hit
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGG528750.1095850266335656No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)