FastQCFastQC Report
Thu 16 May 2024
EGAF00007948422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46595665
Total Bases6.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGG579570.12438281544002001No Hit
CGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGGGCCT519870.11157046476319202No Hit
CGGGCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGG483830.10383583966448381No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)