FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499272
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47450.950383758752744No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21640.43343107564614075No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14820.2968321876652406No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14420.28882052268102354No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14390.28821964780720727No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13150.26338348635613457No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12220.24475636526782996No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12040.24115111602493233No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9670.19368200099344646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9390.18807383550449452No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8560.17144963066224422No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8390.168044673043952No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7670.15362367607236135No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7540.15101988495249083No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7340.14701405246038232No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6820.1365988879809002No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6550.1311910141165537No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6430.1287875146212886No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6270.12558284862760177No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5880.1177714752679902No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5690.11396593440048712No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5570.111562434905222No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5340.10695572753929722No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5110.10234902017337243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)