FastQCFastQC Report
Sun 21 May 2023
EGAF00007948435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478981
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA51461.0743641188272604No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27160.5670371058559733No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24990.5217325948210889No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21790.4549240992857754No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC18680.3899945926873926No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16880.35241481394877877No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG16790.35053582501184805No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG16510.34469008165250814No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14110.294583710001023No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG13050.2724533958549504No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9830.20522734722254118No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8710.18184437378518148No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7320.15282443353702965No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7270.15178055079429037No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7060.14739624327478543No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7000.1461435839834983No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6490.13549598000755772No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5670.11837630302663363No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5570.11628853754115508No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4960.10355316807973594No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4900.1023005087884488No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4790.10000396675442241No Hit

[OK]Adapter Content

Adapter graph