FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511001
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22040.4313103105473374No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21060.41213226588597673No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20910.40919685088678887No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19890.3892360288923114No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16100.31506787657949786No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12510.24481361093226825No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG12070.23620306026798382No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11980.2344418112684711No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11910.23307195093551675No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA11680.22857098127009537No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10120.1980426652785415No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10090.19745558227870397No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9570.187279476948186No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9490.1857139222819525No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9210.18023448095013514No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA9050.17710337161766807No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8550.1673186549537085No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8340.1632090739548455No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8180.16007796462237842No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7940.15538130062367786No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7710.15088033095825645No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6930.13561617296247952No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6720.1315065919636165No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6690.13091950896377894No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6300.12328742996589048No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6280.1228960412993321No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT6190.12113479229981937No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5940.11624243396783959No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5890.11526396230144363No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5860.11467687930160607No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5830.1140897963017685No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5650.11056729830274306No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5470.1070448003037176No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5320.10410938530452975No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5260.1029352193048546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)