FastQCFastQC Report
Wed 31 May 2023
EGAF00007948439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511001
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48670.9524443200698238No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30790.6025428521666298No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21170.41428490355204783No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17550.34344355490498063No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13640.26692707059281684No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13430.26281748959395385No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12760.249705969264248No Hit
TCCTACACCAACGGCAAACTGACTATCACCC12170.23816000360077574No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG11530.2256355662709075No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11170.2185905702728566No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11140.21800348727301902No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11010.21545946094038956No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10590.20724029894266355No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10020.19608572194574964No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG9480.1855182279486733No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9120.1784732319506224No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9120.1784732319506224No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA9110.17827753761734322No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8970.17553781695143456No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8660.1694712926197796No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8520.16673157195387095No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7930.15518560629039863No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7060.138160199295109No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6840.1338549239629668No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6590.128962565630987No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6560.12837548263114945No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6440.12602715063179915No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6370.12465729029884481No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6280.1228960412993321No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6230.12191756963293614No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA6120.11976493196686504No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6010.11761229430079392No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5960.11663382263439799No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5740.11232854730225576No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5670.11095868696930143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)