FastQCFastQC Report
Wed 31 May 2023
EGAF00007948440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476794
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC46670.9788294315784174No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT20240.424501986182712No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG20030.42009756834188344No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG19620.411498466843123No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16010.3357844268174516No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15940.3343162875371754No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT15380.322571173294966No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG15310.32110303401468976No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15050.31564994525937823No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC14790.31019685650406675No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT14690.30809951467510077No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13590.28502875455647514No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT13210.2770588556064044No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG12510.26237746280364266No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT11910.24979341182984685No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11780.2470668674521911No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG11100.2328049430152225No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11010.23091733536915313No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT11000.23070760118625655No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9570.2007156130320432No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC9210.1931651824477657No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT9170.19232624571617932No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8630.18100059983976308No Hit
TTTAACCGCCTGATATTCAGTCAGGCCCAGACGGCGTTTGTTGG8220.17240149834100263No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG8200.17198202997520942No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8050.16883601723176048No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG8010.1679970805001741No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7960.1669484095856911No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7770.16296346011065577No Hit
CAGAGAGCTTTCCAGTTTGATCAGTTCTGCAATGCCATCGTTCA7540.15813957390403402No Hit
GGATGCGGACGCAGTGGTAGCACGAGACTGACGCGGGGCGGTAG7520.15772010553824084No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7290.1528962193316191No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7180.15058914331975654No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT7000.1468139280276178No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6960.14597499129603142No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6930.1453457887473416No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6780.14219977600389266No Hit
GTAAGCGCCCTGGGTGGTCTGCATGATAGCACCCGCTTTCGGGG6660.1396829658091335No Hit
TACAGACGCGGAGATCATCTGGCGAATCTTCTCCTGCGGGTCGC6530.13695642143147774No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6510.13653695306568456No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6480.13590775051699475No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6450.135278547968305No Hit
TCACATAGATTTTTCAATCTTGATCAGTTCCAGGATACCGTCCT6220.13045466176168324No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6210.13024492757878664No Hit
CATGATGCTAGAGCTCACGTTTTCGTTCTCACCACGATAGCGTT6180.12961572503009686No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG6120.12835731993271726No Hit
CAGAGATTTTTCAATCTTGATCAGTTCCGCGATACCGTCGTACA5830.12227502862871596No Hit
CAGTTCGATAATGCCGTCCTGCATTTCCTTCACTGCCTGGTATT5640.11829007915368063No Hit
CAGTTCTTTCTCCAGTTTAATCAGTTCCGCGATGCCGTCGTGCA5610.11766087660499083No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5530.11598300314181807No Hit
CGGTTTATTGCCATCTTCCTTACCCGGTTTGTTGCCATCCTCTT5500.11535380059312828No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5490.11514406641023167No Hit
AGCCGGCTTTTTCGGCGGCTGAACAGGTGGTTTCGGGGCACCCG5470.11472459804443848No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5430.1138856613128521No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5410.1134661929470589No Hit
AGTGATAACGTAACGGGTTTCGATCATGTCTTCCGGCTGCACGG5370.11262725621547251No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5330.11178831948388612No Hit
CACCTGACCATTGGCGTGAGTGGTAACGTTGTAGGCGTTAGTTT5310.11136885111809293No Hit
CTGCCAACCGTCAGTACCATAGATCTCGACGTTTTCCTTGTTGA5290.11094938275229974No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5260.11032018020360995No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5250.11011044602071336No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5120.1073839016430576No Hit
AGGTCACTGCATTTCTTTTTCAATTTTGATCAGCTCCAGGATAC5120.1073839016430576No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG5100.10696443327726439No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5080.10654496491147121No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG5020.10528655981409162No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4990.10465735726540182No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4970.10423788889960864No Hit
CAGAGATTTCTCCATCTTAATCAGTTCGATGATGCCGTCCTGCA4850.10172107870484946No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG4850.10172107870484946No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4820.10109187615615968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)