FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518163
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27920.5388265854566999No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20170.3892597503102306No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15170.2927650179576697No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14790.2854314182988751No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14440.2786767870341958No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14250.27500998720479847No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12960.2501143462578378No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12620.24355270445786367No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12230.23602611533436388No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12160.23467518908142806No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10480.2022529590109676No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10360.1999370854345061No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG10330.19935811704039075No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10090.19472636988746786No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9940.191831527916891No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9650.1862348334404425No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG9630.18584885451103225No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9010.17388350769931468No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8910.17195361305226348No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8810.17002371840521224No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8710.16809382375816107No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8260.15940929784643054No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8080.15593548748173836No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7800.15053178246999496No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7420.14319818281120034No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7200.13895241458768767No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7140.13779447779945692No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6980.13470664636417498No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6660.12853098349361108No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6640.12814500456420083No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6550.12640809938185477No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6320.12196934169363695No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6310.12177635222893184No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT6060.11695161561130378No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5930.1144427525701372No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5770.11135492113485525No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5770.11135492113485525No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5670.10942502648780403No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG5670.10942502648780403No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5440.10498626879958622No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5280.10189843736430429No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5240.1011264795054838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)