FastQCFastQC Report
Sun 21 May 2023
EGAF00007948446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464425
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28230.6078484147063573No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27590.594067933466114No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24970.537654088388868No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT13800.2971416267427464No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13570.29218926629703396No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13200.2842224255800183No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12630.2719491844754266No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12040.2592453033320773No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC10510.22630134036712063No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9230.19874037788663398No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8630.1858211767239059No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8460.18216073639446628No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7680.16536577488291973No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7480.16105937449534372No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7460.1606287344565861No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7420.1597674543790709No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6990.15050869354578242No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6960.149862733487646No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6820.1468482532163428No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6790.14620229315820638No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6730.14491037304193358No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6700.14426441298379716No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6590.14189589277063036No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6210.1337137320342359No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6080.13091457178231147No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5950.12811541153038705No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5880.12660817139473543No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5790.1246702912203262No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5750.12380901114281101No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5600.12057921085212898No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5590.12036389083275018No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5260.11325833019324971No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4970.10701404963126447No Hit
GGACAGAGAGGCGGTTTTAGCGTTGGACAGTTTGAAGGTTGCGG4730.10184636916617323No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4650.1001238090111428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)