FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464425
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61251.3188351186951606No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43420.9349195241427571No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27910.6009581740862356No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16880.36346019271141733No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14350.3089842278085805No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14330.3085535877698229No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13650.2939118264520644No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC13020.2803466652311999No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11670.25127846261506165No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC10550.22716262044463584No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9740.2097216988749529No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9310.20046293804166443No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8720.18775905689831512No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8110.17462453571620823No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7980.17182537546428378No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7890.16988749528987457No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7620.16407385476664693No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7500.1614900145341013No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7150.15395381385584325No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7020.15115465360391883No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6960.149862733487646No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6700.14426441298379716No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6460.1390967325187059No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6440.13866609247994832No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6400.1378048124024331No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6350.1367282123055391No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6010.12940733164665985No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5840.12574689131722022No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5790.1246702912203262No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5550.11950261075523497No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5520.11885665069709857No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5290.11390429025138613No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5260.11325833019324971No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5250.11304301017387092No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5090.10959788986381008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)