FastQCFastQC Report
Wed 31 May 2023
EGAF00007948451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459400
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44330.9649542882020026No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36330.7908141053548106No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24230.5274270787984328No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13050.2840661732694819No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12880.28036569438397907No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12230.26621680452764473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12200.2655637788419678No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10550.22964736612973444No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9070.19743143230300395No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7950.17305180670439704No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7890.17174575533304312No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7360.16020896821941663No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7090.1543317370483239No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6380.1388767958206356No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6260.13626469307792774No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6180.1345232912494558No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5740.12494558119286026No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5670.12342185459294733No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5180.1127557683935568No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5020.10927296473661297No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4720.10274270787984327No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4710.10252503265128429No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4700.1023073574227253No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG4600.1001306051371354No Hit

[OK]Adapter Content

Adapter graph