FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404201
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11580.2864911269393198No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11330.28030608533873No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9280.22958874421389355No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8280.20484857781153434No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7930.19618951957070863No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7920.19594211790668506No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7720.1909940846262132No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7650.18926227297804804No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6830.1689753365281135No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6560.1622954915994765No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6460.15982147495924057No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6400.15833706497509903No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5620.1390397351812588No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5460.13508130855688136No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5360.13260729191664544No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5110.12642225031605564No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4510.11157815047464009No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4410.10910413383440416No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4130.10217688724174359No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4110.1016820839136964No Hit

[OK]Adapter Content

Adapter graph