FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520593
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA49480.9504545777603617No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23140.4444931068992476No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21630.4154877226547418No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18910.3632396132871552No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10320.19823547377701964No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10040.19285699193035633No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6550.1258180574844456No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5940.1141006506042148No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5910.11352438469207232No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5660.1087221687575515No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5660.1087221687575515No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5540.10641710510898149No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5420.10411204146041149No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5230.10046235735017565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)