FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426183
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG17720.4157838299509835No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16840.3951354230459685No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10310.24191485817125508No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9910.23252921866897552No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9340.2191546823782272No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8960.21023832485106164No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8820.2069533510252638No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7200.16894151104103167No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7030.16495261425256286No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6620.15533233376272634No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6170.14477348932266185No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5520.1295218251314576No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5060.11872833970383616No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4920.11544336587803831No Hit
CGCACGCAGGCCGCTTGCGACGTTAGTGATGGCCTTATTACCCG4920.11544336587803831No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4670.1095773411891136No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4640.10887341822644263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)