FastQCFastQC Report
Sun 21 May 2023
EGAF00007948461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426183
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40870.9589777161454116No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23080.5415513992815293No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT17410.40850995933671685No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17350.4071021134113749No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16640.39044260329482877No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10750.2522390616237626No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9590.2250207070671519No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7250.1701147159788166No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6980.16377940931477794No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6780.15908658956363816No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6240.14641597623556077No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6030.14148851549686403No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5490.12881790216878666No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5430.1274100562434447No Hit
CTGACTTCTATTACTCTGGGCGGTACCACCA5030.11802441674116518No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4940.11591264785315229No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4900.11497408390292432No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4380.10277275254996093No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4350.10206882958728997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)