FastQCFastQC Report
Wed 31 May 2023
EGAF00007948463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences378681
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48601.2834021247435177No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6060.16002915382604355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5600.14788172630789503No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5380.14207208706008487No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5200.1373187458573311No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4510.11909760458010832No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3960.10457350646058293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)