FastQCFastQC Report
Sun 21 May 2023
EGAF00007948464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369245
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12460.33744532762799767No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8630.23372015870221666No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6040.16357702880201494No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5060.13703638505599264No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5020.13595309347452234No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4130.11184985578680821No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC3870.10480846050725129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)