FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369245
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48381.310241167788325No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15830.4287126433668702No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12580.3406952023724086No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6500.17603488198892334No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5220.14136955138187382No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5070.1373072079513602No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4890.13243239583474387No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4160.11266232447291094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)