FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366133
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG15060.41132593893475866No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15040.41077968934785997No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13210.3607978521466243No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA11850.3236528802375093No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10320.28186478683975497No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9920.27093979510177996No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9640.26329230088519745No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8940.24417356534374124No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8770.23953044385510183No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7460.2037510959132337No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6230.1701567463189606No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5710.1559542570595931No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5310.14502926532161808No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4800.13109990085569997No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4200.11471241324873749No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4090.11170804052079435No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG3960.10815741820595248No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG3900.10651866944525623No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC3770.10296804713041435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)