FastQCFastQC Report
Sun 21 May 2023
EGAF00007948467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366133
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54691.4937194953746316No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16070.43891154307314556No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15260.41678843480374617No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14660.40040094719678365No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13250.3618903513204218No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG11590.31655163560782557No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10640.290604780230135No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10460.2856885339480462No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9990.2728516686559256No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8470.23133670005162058No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7540.2059360942608287No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6740.18408611078487871No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5980.16332862648272622No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5750.15704675623339062No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5480.1496723868102575No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5030.1373817711050356No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4280.11689741159633248No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4040.11034241655354748No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4030.1100692917600981No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4020.10979616696664873No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG3860.10542617027145874No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT3820.10433367109766124No Hit

[OK]Adapter Content

Adapter graph