FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424378
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT69601.6400473163076315No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22300.5254749303686808No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20150.47481254918963756No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19760.46562262888274136No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18550.4371103120331402No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14430.3400270513551598No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12520.2950200057495912No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10000.23563898222810795No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9780.23045492461908956No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9310.2193798924543685No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8640.20359208064508527No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7850.18497660104906474No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7460.17578668074216852No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7180.1691887892397815No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7130.168010594328641No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7050.16612548247081613No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6970.16424037061299127No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6490.15292969946604207No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5990.14114775035463667No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5780.1361993317278464No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5690.13407858088779342No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5680.1338429419055653No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5550.13077963513659993No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5510.1298370792076875No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5400.1272450504031783No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5230.12323918770530047No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5210.12276790974084424No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5150.1213540758474756No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5090.11994024195410695No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5010.11805513009628207No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5000.11781949111405397No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4930.11617001823845721No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4900.11546310129177291No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4470.10533062505596426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)