FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392353
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59431.514707419084345No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23990.6114391886897769No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16570.42232377476405175No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13720.3496851049947369No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13630.34739125226517953No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13060.3328635183113166No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12000.30584703060764157No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11080.28239875826105576No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9250.23575708609339038No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9050.23065963558326305No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9000.2293852729557312No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7810.1990554424204734No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5360.13661167367141325No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4980.12692651770217125No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4250.1083208233402064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)