FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374247
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54971.4688160492936484No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47081.257992716040476No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC32370.8649367930805056No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18830.5031436457740476No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9860.263462365763787No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8680.23193238689956097No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8460.22605391626385782No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7910.21135773967459995No Hit
TCCACCGGTGGTAACGGCCTGGTTGGTTTCG7610.20334164335318655No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7320.19559275024248693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7020.1875766539210735No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6840.18276699612822547No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6070.16219234890326442No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6030.1611235360604093No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5120.1368080438854553No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4960.13253279251403485No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4780.12772313472118682No Hit
GGCGAAGGTGTAGTTGGCTTCGCGGATGTTC4750.12692152508904547No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4590.12264627371762499No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4410.11783661592477696No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4200.11222534849978757No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3840.1026060329140915No Hit

[OK]Adapter Content

Adapter graph