FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382664
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56691.481456316768758No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40241.051575272301549No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26460.6914682332281061No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21220.5545334810695546No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19740.5158572533606507No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15820.41341751510463487No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15570.40688436853218485No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13830.36141366838793304No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12840.33554240796103113No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12400.32404406999351915No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10460.27334685259130725No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10430.2725628750026133No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7790.20357284719754146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7620.19913030752827546No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7600.19860765580247947No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7030.1837120816172935No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6920.18083749712541553No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6850.1790082160851295No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5440.1421612694165116No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5250.13719607802144962No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5030.13144690903769363No Hit
GCGTCTCGCGTACTGGAAGGTACTAAAAAGG5000.13066293144899965No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4350.1136767503606297No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG3940.10296238998181173No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC3850.10061045721572973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)