FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences370068
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18830.5088254050606916No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18180.49126106553390186No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG17770.4801820206016192No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG14030.3791195131705524No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12170.3288584800631235No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG11900.3215625236443032No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11560.3123750229687517No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10840.2929191391852308No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10570.2856231827664105No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9920.2680588432396208No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9240.24968384188851778No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8820.23833457634813063No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8320.2248235459429078No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8090.2186084719565053No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7940.21455516283493845No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG7610.20563788276749137No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7160.19347795540279084No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6910.18672244020017942No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6390.17267096857874767No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6350.17159008614632987No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6020.1626728060788828No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5980.16159192364646496No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5740.15510662905195802No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5670.15321508479522683No Hit
ACGCGCGCGGATAAATTTACGAACGCCTTCGGCAGAATCAGTGG5550.14997243749797334No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5330.1440275841196753No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5250.14186581925483965No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5230.14132537803863074No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4850.1310569949306614No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4830.13051655371445248No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4690.12673346520099008No Hit
GTCAACCAGGGACACGGTTTCGCCGGTAAACAGTGGGCTGAAGC4600.12430147972804999No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4290.11592464087681184No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT3750.10133272803917119No Hit
CGGTGCAACTTTGGCCGTTACGGTCACGTTGCCGGTTTTGGTAA3730.10079228682296226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)