FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences370068
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48931.3221894354551056No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19160.5177426851281386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18450.49855702195272217No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17270.46667099019639635No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13760.3718235567517321No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13330.3602040706032405No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12340.3334522304008993No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12220.3302095831036458No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12170.3288584800631235No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11770.3180496557389453No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11750.31750921452273634No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11540.3118345817525428No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11080.29940443377973774No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10370.2802187706043214No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9880.266977960807203No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9000.24319854729401083No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8870.23968567938865293No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7840.21185295675389387No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7770.20996141249716269No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6980.18861398445691063No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6830.18456067533534376No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6760.18266913107861257No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6540.17672427770031454No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6480.1751029540516878No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6460.17456251283547888No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6100.16483457094371845No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5580.15078309932228673No Hit
TTCGGTGCACTGTACAGCGGTCGTATCGCTG5560.15024265810607781No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5130.13862317195758617No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4970.13429964222791488No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4840.13078677432255692No Hit
GGTGAACTGGCTGCATCTGCGGCATCCCTGA4830.13051655371445248No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4250.11484375844439401No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3970.10727758141746922No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG3830.10349449290400684No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT3780.10214338986348455No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC3720.10052206621485782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)