FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388916
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57501.478468358205885No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31200.8022297874091063No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22350.574674222711331No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20330.5227349864752285No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9470.2434973104732127No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9400.24169743595017948No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7920.20364294603461933No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7800.20055744685227658No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7450.19155807423711033No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6880.17690195312098242No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6860.17638770325725864No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6840.17587345339353486No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6680.17175945448374455No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6160.15838895802692612No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5780.1486182106161742No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5610.144247086774522No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4770.12264859249812299No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4680.12033446811136594No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC4670.12007734317950405No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4650.11956309331578029No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4560.11724896892902324No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4490.11544909440599No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4410.11339209495109484No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4380.11262072015550915No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4280.11004947083689022No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC4170.10722109658640941No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4020.10336422260848102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)