FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432568
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35350.8172125538643635No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25950.5999056795694551No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22160.5122893972739546No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13270.30677257679717407No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11430.264235912041575No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11090.2563758761628229No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9750.2253980876995062No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8570.1981191396497198No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8440.1951138318137264No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8170.1888720386158939No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7980.18447966562482662No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7660.1770819847977659No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7630.17638845222022895No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7180.16598546355717483No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7140.16506075345379223No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7040.16274897819533576No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6400.14795361654121433No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5880.13593238519724066No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5630.13015294705109948No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5450.12599175158587783No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5440.12576057406003216No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5280.12206173364650182No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5220.12067466849142794No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5100.11790053818128017No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4870.11258345508683028No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4650.10749754951822604No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC4600.10634166188899781No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4570.10564812931146085No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC4400.10171811137208485No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4330.10009986869116531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)