FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405233
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53221.3133185105852683No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33390.8239704071484799No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23530.5806535992873235No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20550.5071156593860816No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10520.2596037341480087No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10140.25022641295254827No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8690.21444452944355472No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8280.20432689341687377No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7870.1942092573901928No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7380.18211744848025704No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7220.17816910271374742No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6650.16410312092055682No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6490.1601547751540472No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6280.1549725713355033No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6200.15299839845224844No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6110.1507774539585868No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5590.13794533021743047No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5220.12881478063237695No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5160.1273341509699358No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5110.12610029291790156No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5040.12437289164505358No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4860.11993100265773025No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC4800.11845037299528913No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4760.11746328655366173No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC4750.11721651494325487No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4650.11474879883918633No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG4350.10734565052698078No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4230.10438439120209854No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4080.10068281704599576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)