FastQCFastQC Report
Sun 21 May 2023
EGAF00007948487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437697
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT60871.390688078739402No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24760.56568813585654No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13980.3193990363196458No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13310.30409164330575716No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11770.268907486229058No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7950.18163249919464836No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6310.14416365659348818No Hit
TACATCCACCTGATCCCGGCGAACGTAAACG5180.11834671016707907No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5070.11583355609017197No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4880.11149265359369609No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4800.1096649051741273No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4580.10463859702031313No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4420.10098310018117557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)