FastQCFastQC Report
Sun 21 May 2023
EGAF00007948489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407699
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56701.3907318879859898No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53401.3097898204312497No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23030.5648775199350501No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12310.3019384398784397No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10610.26024101113811904No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7360.18052533854632954No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5810.14250709469486067No Hit
TACATCCACCTGATCCCGGCGAACGTAAACG5310.1302431450653546No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5020.12313005428024106No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4670.1145452895395868No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4120.10105494494713012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)