FastQCFastQC Report
Sun 21 May 2023
EGAF00007948491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417521
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55041.3182570457533873No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38030.9108523882631053No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC33420.800438780324822No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG28130.6737385664433646No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG26740.6404468278242292No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26160.6265553109903453No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC17960.4301580040285398No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17330.415068942640011No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16450.3939921584782562No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13260.31758881589189525No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12890.3087269861875211No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12740.3051343525235856No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12370.29627252281921146No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10720.25675355251592136No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10390.24884975845526333No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8300.19879239607109583No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7790.18657744161371526No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7010.1678957465612508No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6960.16669820200660565No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6330.1516091406180767No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6080.14562141784485091No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5850.1401127128934832No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5220.12502365150495423No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5180.12406561586123811No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5100.12214954457380586No Hit
GCGGACATCCCATACAAAGTGGAGCCGAACT4430.10610244754156077No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG4330.10370735843227047No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4320.10346784952134144No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4290.10274932278855435No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4230.10131226932298017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)