FastQCFastQC Report
Sun 21 May 2023
EGAF00007948493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380636
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51371.3495833289546968No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24130.6339389863281455No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17280.4539770279216889No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15250.4006452358683887No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14530.38172952637165164No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12570.33023676163053417No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11820.31053289757143304No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9830.25825197826795154No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9230.24248888702067067No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9140.24012442333357856No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9060.23802267783394107No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7970.20938639540138085No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7790.20465746802719656No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7700.20229300434010444No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7700.20229300434010444No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7310.1920469950293719No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6990.1836400130308221No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6820.1791738038440925No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6460.16971594909572402No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6270.16472430353408504No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6230.16367343078426633No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6170.16209712165953824No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5920.15552916697317123No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5710.15001208503662292No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4890.12846919366533907No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4710.1237402662911548No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4640.12190123897897205No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4440.11664687522987842No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4220.11086707510587543No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4110.10797717504387394No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4010.10534999316932712No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT3940.10351096585714437No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG3940.10351096585714437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)