FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409604
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC41671.0173240495698284No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA30480.7441333580726751No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT28390.6931084657376393No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT26120.6376890850675286No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA25320.6181580258005294No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22480.5488227654026816No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19220.4692336988896593No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16540.4038046503452115No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12560.30663763049188975No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12010.2932100272458277No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10470.2556127381568539No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT10340.25243894102596653No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10220.24950928213591664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9730.23754650833487956No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9210.22485131981132997No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8710.21264440776945537No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8250.20141404869093074No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7430.18139471294225643No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7050.17211745979043175No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6680.16308434487944454No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6430.15698088885850725No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5930.14477397681663265No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5900.14404156209412017No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5880.14355328561244518No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5860.14306500913077022No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5860.14306500913077022No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5710.13940293551820784No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5670.13842638255485787No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5640.1376939678323454No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5630.1374498295915079No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4770.11645394087948359No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4750.11596566439780862No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG4690.11450083495278367No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4530.1105946230993838No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4430.10815324069100889No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4420.10790910245017139No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG4420.10790910245017139No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4410.10766496420933389No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4240.10351461411509653No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4160.10156150818839661No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)