FastQCFastQC Report
Wed 31 May 2023
EGAF00007948499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences342396
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50531.4757765861750722No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22780.6653115106484889No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21600.6308484912206919No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14120.41238799518685965No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13730.400997675206486No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12650.3694552506454515No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8490.24795850418813303No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8470.24737438521478056No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7520.21962873398053717No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6070.17728010841248146No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5580.1629691935653454No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5230.15274711153167678No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5050.14749004077150435No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4950.14456944590474188No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4710.13756001822451197No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4550.13288706643769202No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4490.13113470951763456No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4450.12996647157092958No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4330.1264617577308146No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4320.12616969824413837No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4040.11799203261720348No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3710.10835406955688735No Hit

[OK]Adapter Content

Adapter graph