FastQCFastQC Report
Wed 31 May 2023
EGAF00007948501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467181
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39240.8399314184438152No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21450.4591368227731864No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13960.29881352195401784No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9340.19992251397210076No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8840.18922002393076773No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7400.15839685261172864No Hit
CGTCCTTCCGATATCGACACCGCGGCACGCG6000.1284298804959962No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5940.12714558169103624No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5400.11558689244639658No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5260.11259019523482333No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.11259019523482333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)