FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566449
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42480.7499351221380919No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18860.33295142192854077No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18030.318298734749289No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10100.17830378374752184No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9690.17106570935777096No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8200.1447614877950177No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7420.13099149261451604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7220.1274607246195156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6170.10892419264576333No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6080.10733534704801315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)