FastQCFastQC Report
Sun 21 May 2023
EGAF00007948510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560633
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21190.37796562100340153No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11370.20280647054311823No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10960.19549330845669094No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9390.1674892487598839No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8830.15750053956866614No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7500.1337773552395239No Hit
CTGGTCCATGGTCTCTTTCGGCATTGCGCCGTAAGTGGTCAGGT6930.12361027624132007No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG6160.10987580110339563No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6000.10702188419161912No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5940.10595166534970292No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5810.1036328578588845No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5650.10077894094710799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)