FastQCFastQC Report
Sun 21 May 2023
EGAF00007948511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560633
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45250.8071233766117942No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23820.42487688024072784No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21070.37582518331956916No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10830.19317450096587252No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9050.16142467532235882No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8100.14447954365868582No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7190.1282478912229569No Hit
ATGGTTGGTGGTGAAGCCGGCAAAGAAGCGG6860.12236168759241785No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6440.11487015569900452No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC6270.11183786898024198No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5950.10613003515668895No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5820.10381122766587053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)