FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524356
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17750.33851047761444514No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12190.23247564631662457No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12050.22980570452135574No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9860.18804018643822137No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6030.1149982073247946No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5670.10813264270838896No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5630.107369802195455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)