FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385569
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36080.9357598769610627No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24100.6250502504091356No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22770.5905557760089634No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18120.46995479408354923No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16780.43520096273299985No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16520.42845768202319173No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15880.41185883719904864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11510.2985198498841971No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10970.28451457456382645No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9550.24768588761025911No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9050.23471804009139738No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8380.21734112441612266No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC8070.20930105895442838No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8020.20800427420254222No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7370.19114607242802195No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7250.18803378902349516No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6550.16987880249708873No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6270.16261680788652613No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6140.1592451675316221No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6110.1584670966804904No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6070.15742966887898144No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5710.148092818665401No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5050.13097525994050352No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4840.1255287639825816No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4500.11671062766975561No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4400.11411705816598326No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4260.11048606086070198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)