FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497537
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17160.34489897233773564No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15010.30168610575695876No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12990.2610861101787405No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12070.24259502308371034No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10900.2190791840606829No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10850.21807423367508344No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10400.20902968020468832No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10290.2068187893563695No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9820.19737225573173453No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8670.17425839686294686No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8300.16682176400951085No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7200.14471285552632268No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6900.1386831532127259No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6870.1380801829813662No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6430.12923661958809093No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6430.12923661958809093No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6380.12823166920249146No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5730.11516731418969846No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5140.1033088996396248No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5140.1033088996396248No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5020.10089701871418609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)