FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531102
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28940.544904745227847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22760.4285429164265998No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22640.4262834634401678No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC22590.42534202469582116No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19170.36094761458250957No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC18790.35379268012547493No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17080.3215954750688192No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC14740.2775361418333955No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14410.2713226461207075No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC12990.24458578578126236No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11880.22368584565676652No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11430.21521289695764656No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11090.20881111349608925No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10600.199585013801492No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10110.1903589141068947No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9900.18640487138063877No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9300.17510760644847884No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7950.149688760351119No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7440.14008608515878304No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6830.1286005324777538No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6380.12012758377863388No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5920.11146634733064457No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5790.10901860659534328No Hit

[OK]Adapter Content

Adapter graph