FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513366
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41750.8132599354067078No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23510.45795787021345397No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16580.3229664605758854No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14640.28517665758932226No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13160.2563473233521503No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13090.25498377375985165No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9500.18505315895481977No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7440.14492584238145884No Hit
TTCAGCTACGGTAATGCTAACTGGAAAGACC6800.132459103251871No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6800.132459103251871No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6290.12252467050798066No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6290.12252467050798066No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6080.11843402173108465No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6060.11804443613328502No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6030.11746005773658559No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5870.11434337295418862No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5840.11375899455748921No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5660.11025272417729262No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA5580.10869438178609413No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5450.10616207540039659No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5410.10538290420479737No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5340.10401935461249869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)