FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540499
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11710.21665164967927786No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11020.20388566861363294No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC10480.19389490082312827No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9780.1809439055391407No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9280.1716931946220067No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7070.1308050523682745No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6980.1291399244031904No Hit
ACGACGATCACCGAAGTTGCGGTGTTCACCGCGTTTAAAGTCAC6220.11507884380914674No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6140.1135987300624053No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5690.1052730902369847No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5650.10453303336361398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)